STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34939.1ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2909 8.1e-43 ABC transporter component K02065. (257 aa)    
Predicted Functional Partners:
EFB34938.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EFB35454.1
Hypothetical protein; KEGG: tel:tll2407 0.00033 L-aspartate oxidase K00278.
 
 0.994
EFB34937.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0251 1.7e-74 ATPase; Psort location: Cytoplasmic, score: 9.12.
 
   
0.727
EFB34998.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 2.5e-35 ATPase K06020; Psort location: CytoplasmicMembrane, score: 10.00.
 
      0.665
cysS
cysteine--tRNA ligase; KEGG: bth:BT3351 7.4e-207 cysteinyl-tRNA synthetase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.567
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.490
EFB35667.1
KEGG: afu:AF1021 2.5e-25 ABC transporter, ATP-binding protein K02017; Psort location: Cytoplasmic, score: 9.12.
  
 
0.489
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
     0.489
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
     0.487
tig
Trigger factor; KEGG: chu:CHU_1705 5.0e-50 tig; peptidyl-prolyl cis-trans isomerase, trigger factor K03545; Psort location: Cytoplasmic, score: 8.96.
       0.443
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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