STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34846.1Pyridine nucleotide-disulfide oxidoreductase; KEGG: bth:BT0552 1.5e-174 glutamate synthase, small subunit K00266; Psort location: Cytoplasmic, score: 9.26. (447 aa)    
Predicted Functional Partners:
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
 0.999
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.947
gltA
KEGG: bth:BT4310 0. NADPH-dependent glutamate synthase small chain K00266; Psort location: Cytoplasmic, score: 9.97.
 
0.892
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 0.832
gdhA
KEGG: bfr:BF3607 7.3e-200 NADP-specific glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.26; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.738
pyrK
Oxidoreductase NAD-binding domain protein; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
 
 0.723
EFB35514.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.709
EFB35927.1
Electron transfer flavoprotein domain protein.
   
 
 0.663
pyrD
Dihydroorotate dehydrogenase 1B; Catalyzes the conversion of dihydroorotate to orotate.
  
 0.651
carB
Carbamoyl-phosphate synthase, large subunit; KEGG: bfr:BF2635 0. carbamyl phosphate synthetase K01955; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.628
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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