STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34730.1Transporter, MotA/TolQ/ExbB proton channel family protein; Psort location: CytoplasmicMembrane, score: 9.46. (196 aa)    
Predicted Functional Partners:
EFB34729.1
Hypothetical protein.
 
    0.943
EFB34732.1
KEGG: mbu:Mbur_0865 1.7e-115 CobN/magnesium chelatase; Psort location: OuterMembrane, score: 9.49.
 
    0.926
EFB34064.1
Hypothetical protein.
 
 
 0.743
EFB34065.1
Hypothetical protein.
 
 
 0.739
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
 
 0.694
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
 
 0.694
EFB34731.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.679
EFB35547.1
TonB family domain protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.657
EFB34726.1
TonB-dependent receptor plug domain protein; KEGG: shn:Shewana3_3063 1.6e-08 phosphatidylglycerophosphatase K01094; Psort location: OuterMembrane, score: 10.00.
 
    0.645
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.559
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.