STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34758.1Hypothetical protein. (377 aa)    
Predicted Functional Partners:
EFB34395.1
Hypothetical protein.
  
     0.709
EFB34154.1
Hypothetical protein.
  
     0.583
EFB33806.1
Hypothetical protein.
  
     0.477
EFB34394.1
Hypothetical protein.
  
     0.458
EFB36399.1
Hypothetical protein.
  
     0.439
EFB34892.1
Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.437
EFB34757.1
Hypothetical protein.
       0.426
EFB35032.1
HipA domain protein.
  
     0.424
EFB36447.1
Hypothetical protein.
  
     0.417
EFB34577.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.