STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34773.1ATPase, AAA family; KEGG: mtp:Mthe_0613 3.6e-14 AAA family ATPase, CDC48 subfamily; Psort location: CytoplasmicMembrane, score: 7.88. (559 aa)    
Predicted Functional Partners:
EFB36473.1
Tetratricopeptide repeat protein.
  
 0.984
EFB35854.1
Peptidase Do; KEGG: bth:BT1312 3.2e-126 serine protease precursor; Psort location: Periplasmic, score: 9.44.
    
 0.836
EFB36046.1
CHC2 zinc finger domain protein; KEGG: rba:RB6344 0.00012 dnaG; DNA primase K02316.
  
     0.688
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
  0.680
EFB36297.1
KEGG: eci:UTI89_C0417 2.8e-79 sbcC; exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 9.26.
    
   0.647
EFB35812.1
DNA-binding helix-turn-helix protein.
  
     0.538
EFB35516.1
KEGG: pen:PSEEN2819 7.0e-44 ABC efflux transporter, permease/ATP-binding protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.496
EFB36553.1
SPFH/Band 7/PHB domain protein; KEGG: reh:H16_A2036 8.6e-55 membrane protease subunits, stomatin/prohibitin homologs K01423.
   
 
 0.484
EFB34996.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 7.88.
  
     0.483
EFB36851.1
Transporter, small conductance mechanosensitive ion channel MscS family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.479
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.