STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34795.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (395 aa)    
Predicted Functional Partners:
EFB36717.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.688
EFB34796.1
Sel1 repeat protein; FOG: TPR repeat; KEGG: eci:UTI89_C1133 1.2e-10 hypothetical protein.
   
   0.657
EFB36156.1
Cna protein B-type domain protein; KEGG: ddi:DDB0230105 1.4e-06 putative CLK family kinase K08287; Psort location: OuterMembrane, score: 9.49.
  
     0.656
EFB34797.1
Hypothetical protein; KEGG: wbr:WGLp152 0.0054 ppiD; parvulin-like peptidyl-prolyl isomerase K03770; Psort location: OuterMembrane, score: 9.49.
       0.648
EFB34798.1
ADP-ribosylglycohydrolase; KEGG: spr:spr0946 2.4e-50 ADP-ribosylglycohydrolase K05521.
       0.648
EFB34488.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.617
EFB36030.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.583
EFB35105.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.583
EFB33802.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.583
EFB36788.1
Transposase, IS4 family; Psort location: Cytoplasmic, score: 8.96.
  
     0.571
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.