STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34812.1Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (248 aa)    
Predicted Functional Partners:
EFB36827.1
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; KEGG: bth:BT4065 2.0e-149 NADH dehydrogenase I, chain D K00332:K00333; Psort location: Cytoplasmic, score: 8.96.
   
   0.977
EFB36548.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: eci:UTI89_C0501 4.4e-67 htpG; chaperone HSP90, heat shock protein C 62.5 K04079; Psort location: Cytoplasmic, score: 9.26.
   
 0.921
hrpB
KEGG: chu:CHU_3110 3.2e-183 hrpB; ATP-dependent helicase K03579; Psort location: Cytoplasmic, score: 8.96.
   
 0.889
EFB34031.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 6.6e-80 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; Psort location: Cytoplasmic, score: 8.96; Belongs to the DEAD box helicase family.
 
 0.844
EFB34183.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C1614 1.3e-58 dbpA; ATP-independent RNA helicase DbpA K05591; Psort location: Cytoplasmic, score: 8.96.
 
 0.821
EFB34230.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 3.4e-92 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; Psort location: Cytoplasmic, score: 8.96; Belongs to the DEAD box helicase family.
 
 0.816
EFB33671.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bce:BC0791 5.7e-145 NADH dehydrogenase K00359; Psort location: Cytoplasmic, score: 9.26; Belongs to the sulfur carrier protein TusA family.
   
 0.816
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.743
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.742
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.741
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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