STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34815.1Hypothetical protein. (569 aa)    
Predicted Functional Partners:
EFB34816.1
Hypothetical protein.
       0.773
EFB34817.1
Glycosyl hydrolase family 3 N-terminal domain protein; KEGG: bfr:BF4372 4.7e-237 beta-glucosidase K05349; Psort location: Periplasmic, score: 9.44; Belongs to the glycosyl hydrolase 3 family.
       0.566
EFB36929.1
SusD family protein.
  
     0.522
EFB35441.1
SusD family protein.
  
     0.488
EFB35948.1
Hypothetical protein.
  
     0.487
EFB36930.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
  
     0.478
EFB35949.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.457
EFB35610.1
SusD family protein.
 
     0.454
EFB35560.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.445
EFB35442.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: Extracellular, score: 9.64.
  
     0.445
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.