STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34686.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
EFB34687.1
Alpha amylase, catalytic domain protein; KEGG: sru:SRU_2409 1.2e-119 glycosyl hydrolase, family 13, putative K00701; Psort location: Cytoplasmic, score: 9.26.
       0.486
EFB34684.1
Transcriptional regulator, AraC family; KEGG: shn:Shewana3_3829 1.0e-30 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: CytoplasmicMembrane, score: 9.46.
       0.457
EFB34685.1
Hypothetical protein.
       0.457
pulA
Pullulanase, type I; KEGG: bth:BT4689 6.5e-160 pullulanase precursor K01200; Psort location: Cytoplasmic, score: 9.26; Belongs to the glycosyl hydrolase 13 family.
       0.447
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.