STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34488.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (374 aa)    
Predicted Functional Partners:
EFB35519.1
Hypothetical protein.
 
     0.781
EFB35517.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.780
EFB33870.1
Phosphate-selective porin O and P.
  
     0.694
EFB34795.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.617
EFB33852.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.611
EFB34159.1
Hypothetical protein; KEGG: chu:CHU_0834 8.9e-07 CHU large protein K01238.
  
     0.600
EFB34289.1
Hypothetical protein.
  
     0.593
glmS-2
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.547
EFB34487.1
Hypothetical protein.
       0.547
EFB36846.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.515
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.