STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34509.1Hypothetical protein; KEGG: lsl:LSL_1559 5.4e-05 rfaG; glycosyltransferase K00754. (108 aa)    
Predicted Functional Partners:
EFB34508.1
Glycosyltransferase, group 1 family protein; KEGG: lsl:LSL_1559 5.0e-27 rfaG; glycosyltransferase K00754; Psort location: Cytoplasmic, score: 8.96.
 
     0.903
EFB34512.1
Bacterial sugar transferase; KEGG: rso:RS02342 3.2e-55 RSp1008; probable glycosyl transferase transmembrane protein; Psort location: CytoplasmicMembrane, score: 9.82.
 
    0.813
EFB34511.1
Hypothetical protein; KEGG: lla:L0026 1.4e-08 thgA; thiogalactoside acetyltransferase K00633.
  
    0.774
EFB34510.1
ATP-grasp domain protein; KEGG: reh:H16_A2106 1.1e-22 carB1; carbamoylphosphate synthase, large subunit K01954; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB34513.1
Glycosyltransferase, group 1 family protein; KEGG: saa:SAUSA300_0163 2.8e-21 cap5L; capsular polysaccharide biosynthesis protein Cap5L K00754; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB34518.1
AMP-binding enzyme; KEGG: lla:L91510 3.7e-47 dltA; D-alanine activating enzyme K03367; Psort location: Cytoplasmic, score: 9.26.
 
     0.687
EFB34520.1
Glycosyltransferase, group 2 family protein; KEGG: mma:MM1141 3.6e-33 glycosyltransferase K00754.
 
    0.683
EFB34529.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 1.0e-67 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100.
  
 
 0.672
EFB34521.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.642
EFB34180.1
Alpha amylase, catalytic domain protein; KEGG: bfr:BF2243 0. 1,4-alpha-glucan branching enzyme K00700; Psort location: Cytoplasmic, score: 8.96.
   
 0.625
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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