STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34536.1KEGG: bur:Bcep18194_A3984 2.8e-97 polysaccharide biosynthesis protein CapD K01784; Psort location: CytoplasmicMembrane, score: 9.46. (665 aa)    
Predicted Functional Partners:
EFB34529.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 1.0e-67 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100.
  
 
 0.848
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.845
EFB34535.1
Hypothetical protein.
       0.732
EFB34505.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: cno:NT01CX_1789 9.6e-65 perosamine synthetase, putative K01726; Psort location: Cytoplasmic, score: 8.96; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.721
EFB36907.1
KEGG: gka:GK3304 5.3e-126 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809.
  
 
 0.702
EFB36398.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: ava:Ava_0899 1.6e-46 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K00811; Psort location: Cytoplasmic, score: 8.96; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.603
EFB35804.1
Polysaccharide biosynthesis/export protein.
  
 
 0.531
EFB36382.1
Polysaccharide biosynthesis/export protein.
  
 
 0.530
EFB34533.1
Nucleotide sugar dehydrogenase; KEGG: bth:BT0599 1.3e-186 UDP-glucose 6-dehydrogenase K00012; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
    
 0.477
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.458
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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