STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34551.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (216 aa)    
Predicted Functional Partners:
EFB34552.1
ATPase, AAA family; KEGG: cch:Cag_0626 4.6e-111 ATPase K07478.
       0.697
EFB34550.1
Hypothetical protein; KEGG: eci:UTI89_C1705 2.3e-54 yddW; hypothetical lipoprotein YddW precursor K01189.
       0.655
EFB34553.1
Hypothetical protein; KEGG: bca:BCE_5470 0.0015 rpoE; DNA-directed RNA polymerase, delta subunit K03048; Psort location: Cytoplasmic, score: 8.96.
       0.583
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.