STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34562.1Hypothetical protein; KEGG: pfu:PF1715 0.00030 pyrroline-5-carboxylate reductase K00286. (256 aa)    
Predicted Functional Partners:
EFB34561.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bfs:BF3121 7.5e-56 putative lipopolysaccharide biosynthesis-related protein K03270; Psort location: Cytoplasmic, score: 8.96.
       0.705
EFB34563.1
Hypothetical protein.
       0.676
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
 
  
 0.613
maf
Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.589
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
  
 0.564
EFB34190.1
Hypothetical protein.
  
     0.540
hemD
KEGG: chu:CHU_0169 6.3e-59 hemD; uroporphyrinogen-III synthase K01719.
  
     0.490
EFB34140.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.440
EFB36850.1
Hypothetical protein; KEGG: gox:GOX1475 0.00049 putative N-acetylglucosamine kinase K00884; Psort location: Cytoplasmic, score: 8.96.
  
     0.428
EFB34945.1
Putative ACR, COG1399; Psort location: Cytoplasmic, score: 8.96.
  
     0.412
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.