STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34571.1Hypothetical protein; Psort location: OuterMembrane, score: 9.49. (452 aa)    
Predicted Functional Partners:
EFB34572.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 1.7e-19 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
       0.824
EFB35724.1
Hypothetical protein.
 
     0.801
EFB33822.1
Sodium bile acid symporter family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.740
EFB34101.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.732
EFB33961.1
Antioxidant, AhpC/TSA family; KEGG: reh:H16_A0306 0.00069 bcp; peroxiredoxin K00435.
  
    0.682
EFB36517.1
Hypothetical protein; KEGG: cal:orf19.4072 1.1e-05 HYR10; similar to cell surface flocculin K01186; Psort location: OuterMembrane, score: 9.49.
  
     0.653
EFB36599.1
Hypothetical protein.
  
     0.619
EFB36603.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 10.00.
  
     0.603
EFB35752.1
KEGG: bth:BT3933 6.2e-100 tyrA; prephenate dehydrogenase / chorismate mutase K00210:K01850.
  
    0.593
EFB36176.1
Hypothetical protein.
  
     0.584
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.