STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnzPutative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (305 aa)    
Predicted Functional Partners:
EFB34574.1
Hypothetical protein.
       0.746
EFB36128.1
DNA/RNA non-specific endonuclease; KEGG: bbu:BB0411 1.3e-13 nucA; endonuclease precursor K01173.
   
   0.707
EFB35489.1
KEGG: ftf:FTF0610 3.3e-30 DNA/RNA endonuclease family protein K01173; Psort location: Extracellular, score: 9.71.
   
   0.707
EFB34575.1
MazG family protein; KEGG: pha:PSHAa0740 3.0e-36 mazG; nucleoside triphosphate pyrophosphohydrolase, non-specific K02428; Psort location: Cytoplasmic, score: 8.96.
       0.648
argS
arginine--tRNA ligase; KEGG: bfr:BF4421 1.3e-239 arginyl-tRNA synthetase K01887; Psort location: Cytoplasmic, score: 9.26.
  
    0.616
EFB34571.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
       0.538
EFB34572.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 1.7e-19 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
       0.538
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
 
  
 0.511
EFB34577.1
Hypothetical protein.
       0.462
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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