STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thrCThreonine synthase; KEGG: bfs:BF0560 2.3e-180 thrC; threonine synthase K01733; Psort location: Cytoplasmic, score: 8.96. (433 aa)    
Predicted Functional Partners:
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
 
 0.999
ilvA
KEGG: tma:TM0356 4.4e-106 threonine dehydratase catabolic K01754; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.944
serC
Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
   
 0.914
EFB35067.1
Beta-eliminating lyase; KEGG: sac:SACOL1349 1.1e-93 putative threonine aldolase K01620; Psort location: Cytoplasmic, score: 8.96.
   
 0.848
pdxA
Pyridoxal phosphate biosynthetic protein PdxA; KEGG: bfr:BF1080 2.0e-94 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Belongs to the PdxA family.
    
  0.807
leuD
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
 
  
 0.804
EFB34482.1
Proposed homoserine kinase; KEGG: bth:BT2402 2.9e-141 phosphoglycerate mutase K01834; Psort location: Cytoplasmic, score: 8.96.
 
    0.746
EFB36676.1
Amino acid kinase family; KEGG: bth:BT1375 3.6e-175 aspartokinase K00928; Belongs to the aspartokinase family.
 
 
 0.700
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.692
EFB36708.1
Hypothetical protein; KEGG: bth:BT2230 1.6e-09 DNA polymerase III alpha subunit K02337.
    
  0.689
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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