STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34356.1Transporter, DASS family; KEGG: lwe:lwe0586 0.0099 glycerophosphoryl diester phosphodiesterase family protein K01126; Psort location: CytoplasmicMembrane, score: 10.00. (488 aa)    
Predicted Functional Partners:
EFB34358.1
Putative pantothenate kinase; Similar to putative CG5725-PE; KEGG: saa:SAUSA300_2084 2.4e-12 coaA; pantothenate kinase K00867.
 
     0.711
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
 
      0.642
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 
      0.624
EFB34357.1
Hypothetical protein.
       0.572
EFB34355.1
PsbL protein.
       0.547
EFB36113.1
Amidohydrolase family protein; KEGG: bth:BT0250 2.4e-130 dihydroorotase (DHOase) K01465; Psort location: Cytoplasmic, score: 8.96.
     
  0.499
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
  0.499
EFB35260.1
O-methyltransferase; KEGG: bfr:BF4481 2.6e-76 O-methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
 
      0.421
EFB34565.1
Phosphate acetyl/butyryl transferase; KEGG: bfs:BF3408 0. maeB; putative NADP-dependent malic enzyme K00029; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.406
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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