STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34372.1TonB-linked outer membrane protein, SusC/RagA family. (1048 aa)    
Predicted Functional Partners:
EFB34371.1
SusD family protein.
 
     0.958
EFB34369.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
 
     0.933
EFB34368.1
Hypothetical protein.
 
     0.932
EFB34367.1
Putative glycosyl hydrolase family 10; KEGG: sde:Sde_2934 2.4e-14 endo-1,4-beta-xylanase K01181.
 
     0.895
EFB34370.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
    
0.782
EFB34682.1
SusD family protein.
  
     0.752
EFB35677.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.722
EFB33844.1
Tetratricopeptide repeat protein.
  
     0.680
EFB34375.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ana:all4963 8.9e-55 cyaC; adenylate cyclase carring two-component hybrid sensor and regulator domains; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.639
EFB35509.1
Hypothetical protein; KEGG: xcb:XC_1002 1.2e-23 alpha-glucosidase K01187.
  
     0.630
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.