STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiARibosomal subunit interface protein; Psort location: Cytoplasmic, score: 8.96. (103 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.981
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
   0.940
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
   0.939
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.935
rpmH
Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.933
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.933
rpmA
Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.933
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.932
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.932
rpmC
Ribosomal protein L29; Psort location: Cytoplasmic, score: 8.96; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.932
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.