STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34452.1Putative tyrosine recombinase XerC; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (294 aa)    
Predicted Functional Partners:
raiA
Ribosomal subunit interface protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.895
EFB34827.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.737
rpsU
Ribosomal protein S21; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial ribosomal protein bS21 family.
       0.678
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.665
EFB36413.1
FtsK/SpoIIIE family protein; KEGG: pen:PSEEN2212 2.0e-95 ftsK; cell division protein FtsK; Psort location: CytoplasmicMembrane, score: 10.00.
  
   
 0.593
EFB34454.1
Creatinase; KEGG: bfs:BF4027 5.8e-152 putative peptidase K01262; Psort location: Cytoplasmic, score: 8.96; Belongs to the peptidase M24B family.
       0.440
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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