STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34457.1Aminotransferase, class I/II; KEGG: bth:BT1398 7.1e-131 putative aminotransferase B K00842; Psort location: Cytoplasmic, score: 8.96. (400 aa)    
Predicted Functional Partners:
EFB34456.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
     0.955
cysK
Cysteine synthase A; KEGG: bth:BT3080 2.2e-120 cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.890
EFB34067.1
Aminotransferase, class I/II; KEGG: bfr:BF0595 9.4e-168 aspartate aminotransferase K00812.
  
  
0.880
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
    
 0.879
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.879
EFB36199.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.7e-189 putative aspartate aminotransferase K00812.
     
0.874
pepD
Xaa-His dipeptidase; KEGG: bth:BT1615 4.3e-131 aminoacyl-histidine dipeptidase K01270; Psort location: Cytoplasmic, score: 8.96.
    
  0.873
pepD-2
Xaa-His dipeptidase; KEGG: bth:BT4045 1.8e-155 aminoacyl-histidine dipeptidase K01270; Psort location: Cytoplasmic, score: 8.96.
    
  0.873
EFB35841.1
Cys/Met metabolism PLP-dependent enzyme; KEGG: ilo:IL2014 1.5e-27 O-acetylhomoserine sulfhydrylase K01740; Psort location: Cytoplasmic, score: 9.26.
    
 0.849
EFB33771.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; KEGG: bth:BT2387 8.8e-172 O-acetylhomoserine (thiol)-lyase K01740; Psort location: Cytoplasmic, score: 9.26.
   
 0.740
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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