STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34464.1Gram-positive signal peptide protein, YSIRK family. (204 aa)    
Predicted Functional Partners:
gldN
Gliding motility-associated protein GldN.
 
     0.859
gldL
Gliding motility-associated protein GldL.
 
     0.808
gldM
Gliding motility-associated protein GldM.
 
     0.804
EFB36420.1
Hypothetical protein.
  
     0.755
EFB35945.1
Hypothetical protein.
  
     0.737
EFB36473.1
Tetratricopeptide repeat protein.
  
 
 
 0.722
EFB36104.1
Hypothetical protein.
  
     0.721
EFB36305.1
Hypothetical protein.
  
     0.701
EFB34469.1
Bacteroidetes-specific putative membrane protein.
 
     0.695
EFB35270.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
    0.694
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.