STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34249.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (495 aa)    
Predicted Functional Partners:
EFB36017.1
Hypothetical protein; KEGG: fnu:FN0522 1.3e-09 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.96.
 
     0.645
EFB36616.1
DnaD domain protein.
  
     0.621
EFB34140.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.589
EFB35463.1
GSCFA family protein.
  
     0.568
EFB36153.1
Putative o-succinylbenzoate synthase; KEGG: chu:CHU_2415 1.1e-63 clcB; chloromuconate cycloisomerase K01860; Psort location: Cytoplasmic, score: 8.96.
  
     0.560
EFB36615.1
UvrD/REP helicase; KEGG: hpa:HPAG1_1502 2.0e-31 ATP-dependent nuclease K01144; Psort location: Cytoplasmic, score: 8.96.
  
     0.546
EFB36169.1
Hypothetical protein.
  
     0.504
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.495
EFB35580.1
Glycosyltransferase, group 2 family protein; KEGG: pto:PTO0268 4.9e-14 glycosyltransferase K00754; Psort location: Cytoplasmic, score: 8.96.
  
     0.482
EFB35253.1
Conserved hypothetical protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
  
    0.470
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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