STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34250.1Carboxylesterase; KEGG: msm:MSMEG_0470 6.9e-69 para-nitrobenzyl esterase K01066; Belongs to the type-B carboxylesterase/lipase family. (513 aa)    
Predicted Functional Partners:
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.821
EFB35041.1
Peptidase, M28 family; KEGG: hsa:25797 1.4e-08 QPCT; glutaminyl-peptide cyclotransferase (glutaminyl cyclase) K00683.
  
 0.798
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.785
hrpB
KEGG: chu:CHU_3110 3.2e-183 hrpB; ATP-dependent helicase K03579; Psort location: Cytoplasmic, score: 8.96.
    
 0.783
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.761
EFB36412.1
3'-5' exonuclease; KEGG: lic:LIC13263 4.7e-05 rnD; ribonuclease D K03684; Psort location: Cytoplasmic, score: 8.96.
    
  0.650
EFB34565.1
Phosphate acetyl/butyryl transferase; KEGG: bfs:BF3408 0. maeB; putative NADP-dependent malic enzyme K00029; Psort location: Cytoplasmic, score: 8.96.
     
 0.579
EFB34251.1
Hypothetical protein.
       0.527
EFB34230.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 3.4e-92 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; Psort location: Cytoplasmic, score: 8.96; Belongs to the DEAD box helicase family.
   
 0.496
EFB34183.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C1614 1.3e-58 dbpA; ATP-independent RNA helicase DbpA K05591; Psort location: Cytoplasmic, score: 8.96.
   
 0.496
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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