STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34255.1Peptidase, S41 family; KEGG: bth:BT3035 1.9e-162 carboxy-terminal processing protease precursor K03797; Belongs to the peptidase S41A family. (527 aa)    
Predicted Functional Partners:
EFB36473.1
Tetratricopeptide repeat protein.
   
 0.767
EFB34254.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: pgi:PG0368 1.7e-214 DNA topoisomerase IV, B subunit, putative K02622; Psort location: Cytoplasmic, score: 8.96.
       0.595
EFB34930.1
PPIC-type PPIASE domain protein; KEGG: chu:CHU_0192 2.1e-22 possible peptidyl-prolyl cis-trans isomerase K01802.
  
 
   0.542
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
   0.537
EFB34253.1
Hypothetical protein; KEGG: gbe:GbCGDNIH1_0235 1.8e-17 dATP pyrophosphohydrolase K01529; Psort location: Cytoplasmic, score: 8.96.
       0.517
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
 
  0.419
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.