STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dprADNA protecting protein DprA. (392 aa)    
Predicted Functional Partners:
EFB34264.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.825
EFB35893.1
ComEC/Rec2-like protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.791
EFB35306.1
Hypothetical protein; KEGG: chu:CHU_0354 2.5e-39 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.776
EFB35236.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 2.9e-166 ch1I; magnesium chelatase, subunit ChlI K07391; Psort location: Cytoplasmic, score: 8.96.
 
 0.775
EFB35229.1
Hypothetical protein; KEGG: chu:CHU_3495 6.5e-18 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.655
EFB34265.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: bcz:BCZK3313 7.3e-10 possible 4-hydroxybenzoyl-CoA thioesterase K01075; Psort location: Cytoplasmic, score: 8.96.
  
    0.594
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 0.554
EFB34262.1
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.494
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 0.493
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.469
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.