STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34264.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (430 aa)    
Predicted Functional Partners:
dprA
DNA protecting protein DprA.
 
     0.825
lepB
KEGG: bth:BT3319 2.7e-145 signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family.
 
     0.698
EFB35368.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.685
EFB33863.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
     0.682
EFB34928.1
Hypothetical protein.
  
     0.663
EFB34265.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: bcz:BCZK3313 7.3e-10 possible 4-hydroxybenzoyl-CoA thioesterase K01075; Psort location: Cytoplasmic, score: 8.96.
       0.654
EFB35739.1
Type I restriction enzyme HsdR protein N-terminal domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.652
EFB34190.1
Hypothetical protein.
  
     0.651
EFB35464.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.625
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.614
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.