STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34267.1KEGG: bth:BT3320 2.2e-81 dihydrodipicolinate reductase K00215; Psort location: Cytoplasmic, score: 8.96; Belongs to the DapB family. (253 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
 
 0.993
EFB35750.1
Aminotransferase, class I/II; KEGG: bfs:BF3716 8.4e-151 putative aminotransferase.
 
  
 0.900
dapL
LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate.
    
 0.846
lepB
KEGG: bth:BT3319 2.7e-145 signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the peptidase S26 family.
 
    0.840
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
  
 0.801
EFB34266.1
Hypothetical protein.
       0.773
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
 
 
 0.733
EFB34141.1
HDIG domain protein; KEGG: bfs:BF3442 7.0e-179 putative polyA polymerase K00970; Psort location: Cytoplasmic, score: 8.96; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.714
EFB34265.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: bcz:BCZK3313 7.3e-10 possible 4-hydroxybenzoyl-CoA thioesterase K01075; Psort location: Cytoplasmic, score: 8.96.
       0.685
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
 
 0.677
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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