STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34163.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
EFB34164.1
Hypothetical protein.
       0.595
EFB34165.1
Sigma-70 region 2; KEGG: reh:H16_A2563 7.6e-15 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily.
       0.575
EFB34166.1
Hypothetical protein.
       0.531
EFB34167.1
Hypothetical protein.
       0.496
galE
KEGG: bth:BT0623 9.6e-127 putative UDP-glucose 4-epimerase K01784; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.465
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.