STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34171.1Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854. (495 aa)    
Predicted Functional Partners:
rpe
KEGG: bfr:BF3902 1.5e-71 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.943
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
  
 
 0.927
EFB36489.1
KEGG: efa:EF1922 2.6e-05 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; Psort location: Cytoplasmic, score: 9.97.
 
 
 
 0.567
EFB34170.1
Hypothetical protein.
       0.544
EFB33962.1
Hypothetical protein; KEGG: rba:RB10048 1.9e-59 sialic acid-specific 9-O-acetylesterase.
 
     0.528
EFB35658.1
Alpha-L-rhamnosidase N-terminal domain protein.
  
   0.499
EFB36362.1
Transporter, SSS family; KEGG: vfi:VF2379 0.0052 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.489
EFB34078.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_3095 4.6e-11 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
 
  
 0.482
EFB36125.1
Response regulator receiver domain protein; KEGG: shn:Shewana3_3829 7.4e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.471
EFB35344.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ana:all4963 9.9e-52 cyaC; adenylate cyclase carring two-component hybrid sensor and regulator domains; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.462
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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