STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34171.1Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854. (495 aa)    
Predicted Functional Partners:
rpe
KEGG: bfr:BF3902 1.5e-71 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.927
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
  
 
 0.900
rhaA
KEGG: bth:BT3764 6.0e-157 L-rhamnose isomerase K01813; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.668
EFB36489.1
KEGG: efa:EF1922 2.6e-05 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; Psort location: Cytoplasmic, score: 9.97.
 
 
 
 0.594
EFB34170.1
Hypothetical protein.
       0.565
EFB34078.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_3095 4.6e-11 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
 
  
 0.538
EFB33962.1
Hypothetical protein; KEGG: rba:RB10048 1.9e-59 sialic acid-specific 9-O-acetylesterase.
 
     0.518
EFB36125.1
Response regulator receiver domain protein; KEGG: shn:Shewana3_3829 7.4e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.496
EFB34072.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ava:Ava_2239 9.6e-62 adenylate/guanylate cyclase K01768; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.481
EFB35584.1
Kinase, PfkB family; KEGG: mta:Moth_0419 7.8e-61 pfkB; PfkB K00874.
 
 
 0.473
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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