STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34173.1ACT domain protein; KEGG: nph:NP5006A 6.1e-09 purU; formyltetrahydrofolate deformylase K01433; Psort location: Cytoplasmic, score: 8.96; Belongs to the UPF0237 family. (90 aa)    
Predicted Functional Partners:
EFB34172.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.947
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
  
 
  0.748
ilvA
KEGG: tma:TM0356 4.4e-106 threonine dehydratase catabolic K01754; Psort location: Cytoplasmic, score: 8.96.
    
  0.740
serC
Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
 0.561
EFB34174.1
YceG family protein; KEGG: sat:SYN_01735 2.0e-23 4-amino-4-deoxychorismate lyase.
       0.476
EFB36549.1
KEGG: bfr:BF1265 1.3e-163 L-serine dehydratase K01752; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.463
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
     
 0.463
EFB36143.1
Phosphoglycerate mutase family protein; KEGG: bsu:BG13062 5.8e-17 yhfR; similar to 2,3-diphosphoglycerate-dependent phosphoglycerate mutase K01834.
    
 0.437
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.