STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34174.1YceG family protein; KEGG: sat:SYN_01735 2.0e-23 4-amino-4-deoxychorismate lyase. (248 aa)    
Predicted Functional Partners:
EFB36141.1
Transglycosylase; KEGG: chu:CHU_3131 9.4e-168 ponA; bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family 51 protein.
  
   
 0.595
EFB34385.1
Peptidase, M23 family; KEGG: mxa:MXAN_5348 8.8e-18 M23 peptidase domain protein.
  
   
 0.594
EFB35130.1
Peptidase, M23 family; KEGG: hit:NTHI0532 8.2e-20 conserved hypothetical metalloprotease; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.585
folP
KEGG: bth:BT3646 2.0e-78 dihydropteroate synthase K00796; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.582
EFB34175.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.572
EFB36457.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.566
EFB36006.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
     0.551
EFB34176.1
HAD hydrolase, family IA, variant 3; KEGG: bfr:BF0877 1.1e-38 phosphoglycolate phosphatase K01091; Psort location: Cytoplasmic, score: 8.96.
       0.534
EFB36949.1
Glutamine amidotransferase, class I; KEGG: bth:BT0531 1.6e-69 anthranilate synthase component II K01658; Psort location: Cytoplasmic, score: 8.96.
     
  0.499
EFB36007.1
Transglycosylase SLT domain protein; KEGG: bfs:BF0693 3.2e-126 putative lytic murein transglycosylase K08307.
  
   
 0.476
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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