STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34180.1Alpha amylase, catalytic domain protein; KEGG: bfr:BF2243 0. 1,4-alpha-glucan branching enzyme K00700; Psort location: Cytoplasmic, score: 8.96. (699 aa)    
Predicted Functional Partners:
EFB36304.1
Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 4.7e-54 glgA; glycogen synthase-related protein K00703; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.997
glgP
KEGG: bfr:BF2726 0. alpha-glucan phosphorylase K00688.
 
 0.996
pulA
Pullulanase, type I; KEGG: bth:BT4689 6.5e-160 pullulanase precursor K01200; Psort location: Cytoplasmic, score: 9.26; Belongs to the glycosyl hydrolase 13 family.
 
 
0.981
EFB36921.1
Glycosyltransferase, group 1 family protein; KEGG: sat:SYN_00881 1.9e-82 4-alpha-glucanotransferase K00705.
 
 0.973
EFB34690.1
KEGG: bfr:BF3828 2.9e-253 4-alpha-glucanotransferase K00705; Psort location: Cytoplasmic, score: 9.26.
 
 0.963
EFB35123.1
Alpha amylase, catalytic domain protein; KEGG: sde:Sde_0563 4.4e-32 alpha-amylase K01176.
 
 
 0.928
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.916
EFB34778.1
KEGG: mes:Meso_3687 3.0e-59 alpha amylase, catalytic region K01187; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.902
EFB36922.1
Glycosyl hydrolase, family 57; KEGG: pgi:PG1683 6.8e-110 hypothetical protein K07405.
 
  
 0.898
EFB33725.1
Starch synthase; KEGG: sat:SYN_00879 8.9e-96 glycogen synthase/glycogen phosphorylase K00688:K00693.
  
 0.826
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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