STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34181.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (369 aa)    
Predicted Functional Partners:
EFB34180.1
Alpha amylase, catalytic domain protein; KEGG: bfr:BF2243 0. 1,4-alpha-glucan branching enzyme K00700; Psort location: Cytoplasmic, score: 8.96.
       0.810
EFB34182.1
Tetratricopeptide repeat protein.
       0.697
EFB34179.1
YhcH/YjgK/YiaL family protein; Psort location: Cytoplasmic, score: 8.96.
       0.683
EFB34178.1
MORN repeat protein; KEGG: tbr:Tb10.406.0580 3.3e-35 protein kinase K00924.
       0.521
EFB34183.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C1614 1.3e-58 dbpA; ATP-independent RNA helicase DbpA K05591; Psort location: Cytoplasmic, score: 8.96.
       0.503
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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