STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serCPutative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (356 aa)    
Predicted Functional Partners:
pdxB-2
4-phosphoerythronate dehydrogenase; KEGG: bfs:BF2073 6.9e-117 serA; putative D-3-phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.26; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 0.998
thrC
Threonine synthase; KEGG: bfs:BF0560 2.3e-180 thrC; threonine synthase K01733; Psort location: Cytoplasmic, score: 8.96.
   
 0.914
cysK
Cysteine synthase A; KEGG: bth:BT3080 2.2e-120 cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.909
pdxA
Pyridoxal phosphate biosynthetic protein PdxA; KEGG: bfr:BF1080 2.0e-94 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Belongs to the PdxA family.
     
 0.887
EFB34810.1
Hypothetical protein.
  
 
 0.738
EFB35751.1
Putative 3-deoxy-7-phosphoheptulonate synthase; KEGG: bfs:BF3717 1.6e-142 putative chorismate mutase K04516:K03856; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.625
EFB34186.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.623
EFB34187.1
Putative YigZ family protein; KEGG: spa:M6_Spy1374 2.8e-24 Xaa-Pro dipeptidase K01271; Psort location: Cytoplasmic, score: 8.96.
       0.623
EFB35749.1
KEGG: bth:BT3936 1.1e-93 prephenate dehydratase K04518; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.620
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.616
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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