STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34193.1Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00. (494 aa)    
Predicted Functional Partners:
EFB35395.1
WxcM-like protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.735
EFB35396.1
Hypothetical protein.
 
     0.688
EFB34962.1
Hypothetical protein.
 
    0.656
EFB34529.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 1.0e-67 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100.
  
  
 0.580
EFB36903.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csa:Csal_1693 6.7e-55 undecaprenyl-phosphate galactosephosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.550
rpsP
Ribosomal protein S16; KEGG: eci:UTI89_C0735 6.5e-07 tolA; membrane spanning protein TolA K03646; Belongs to the bacterial ribosomal protein bS16 family.
       0.539
EFB34137.1
Sporulation and cell division repeat protein.
  
     0.534
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.526
EFB36398.1
DegT/DnrJ/EryC1/StrS aminotransferase family protein; KEGG: ava:Ava_0899 1.6e-46 Cys/Met metabolism pyridoxal-phosphate-dependent enzyme K00811; Psort location: Cytoplasmic, score: 8.96; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.521
rfbB
KEGG: bth:BT0466 1.2e-169 dTDP-glucose 4,6-dehydratase K01710.
  
  
 0.518
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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