STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34142.1Efflux transporter, RND family, MFP subunit; KEGG: cdi:DIP0742 0.0011 putative decarboxylase K01606; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (403 aa)    
Predicted Functional Partners:
EFB34144.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; Psort location: OuterMembrane, score: 9.95.
 
 0.995
EFB34143.1
RND transporter, HAE1 family; KEGG: eci:UTI89_C2351 2.4e-114 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.992
EFB36510.1
Psort location: OuterMembrane, score: 9.92.
 
 0.983
czcA
Heavy metal efflux pump, CzcA family; KEGG: eci:UTI89_C2351 5.5e-76 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.983
EFB36608.1
Outer membrane efflux protein; KEGG: dre:317747 0.0014 rock2; rho-associated, coiled-coil containing protein kinase 2 K04514; Psort location: OuterMembrane, score: 10.00.
  
  0.958
EFB35224.1
Psort location: OuterMembrane, score: 10.00.
  
  0.908
EFB36318.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.769
EFB34090.1
Psort location: OuterMembrane, score: 9.92.
  
  0.746
EFB34089.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; KEGG: pcr:Pcryo_0208 0.0042 phosphoribosylformylglycinamidine synthase K01952.
 
  
 0.691
EFB36319.1
Psort location: OuterMembrane, score: 9.92.
  
  0.673
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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