STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34143.1RND transporter, HAE1 family; KEGG: eci:UTI89_C2351 2.4e-114 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1088 aa)    
Predicted Functional Partners:
EFB34142.1
Efflux transporter, RND family, MFP subunit; KEGG: cdi:DIP0742 0.0011 putative decarboxylase K01606; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.992
EFB34144.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; Psort location: OuterMembrane, score: 9.95.
 0.988
EFB36510.1
Psort location: OuterMembrane, score: 9.92.
 0.945
czcA
Heavy metal efflux pump, CzcA family; KEGG: eci:UTI89_C2351 5.5e-76 yegO; hypothetical protein YegO K07789; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
0.922
EFB36512.1
Efflux transporter, RND family, MFP subunit; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.914
EFB34999.1
Efflux transporter, RND family, MFP subunit; KEGG: sai:Saci_0839 0.0066 reverse gyrase K03170; Psort location: CytoplasmicMembrane, score: 8.02; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.830
EFB35223.1
Efflux transporter, RND family, MFP subunit; KEGG: fnu:FN0522 0.0087 exonuclease SBCC K03546; Psort location: CytoplasmicMembrane, score: 8.02.
 
 0.819
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
 
 0.813
EFB34090.1
Psort location: OuterMembrane, score: 9.92.
 
 0.797
EFB36318.1
Auxiliary transport protein, membrane fusion protein (MFP) family protein; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.777
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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