STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34067.1Aminotransferase, class I/II; KEGG: bfr:BF0595 9.4e-168 aspartate aminotransferase K00812. (397 aa)    
Predicted Functional Partners:
EFB35749.1
KEGG: bth:BT3936 1.1e-93 prephenate dehydratase K04518; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.986
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
  
 0.971
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: bth:BT1362 3.6e-143 flavoprotein K01598:K01922; Psort location: Cytoplasmic, score: 8.96.
  
  0.904
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.904
EFB35752.1
KEGG: bth:BT3933 6.2e-100 tyrA; prephenate dehydrogenase / chorismate mutase K00210:K01850.
 
  
 0.901
EFB36199.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.7e-189 putative aspartate aminotransferase K00812.
  
  
 
0.894
EFB34455.1
Lactate/malate dehydrogenase, NAD binding domain protein; KEGG: pgi:PG1949 2.3e-109 mdh; malate dehydrogenase K00026; Psort location: Cytoplasmic, score: 9.26; Belongs to the LDH/MDH superfamily.
  
 0.894
pepD
Xaa-His dipeptidase; KEGG: bth:BT1615 4.3e-131 aminoacyl-histidine dipeptidase K01270; Psort location: Cytoplasmic, score: 8.96.
    
  0.886
pepD-2
Xaa-His dipeptidase; KEGG: bth:BT4045 1.8e-155 aminoacyl-histidine dipeptidase K01270; Psort location: Cytoplasmic, score: 8.96.
    
  0.886
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
 0.883
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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