STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB34094.1Hypothetical protein; KEGG: oih:OB2331 0.0017 bacillopeptidase F. (88 aa)    
Predicted Functional Partners:
EFB34095.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
 
     0.835
EFB35417.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.805
EFB34096.1
Hypothetical protein.
 
     0.801
EFB33781.1
TonB-dependent receptor.
  
   0.761
EFB34063.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.729
EFB34872.1
Hypothetical protein.
  
    0.655
EFB36816.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.601
EFB35243.1
TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49.
  
     0.601
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
    0.583
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
    0.573
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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