STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB33945.1TonB-linked outer membrane protein, SusC/RagA family. (1003 aa)    
Predicted Functional Partners:
EFB33946.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
 
 
 0.967
EFB36929.1
SusD family protein.
 
 
 0.889
EFB34080.1
SusD family protein.
  
 
   0.880
EFB36925.1
SusD family protein.
  
 
   0.850
EFB36848.1
SusD family protein.
  
 
   0.844
EFB34682.1
SusD family protein.
  
 
   0.843
EFB35603.1
SusD family protein.
  
 
   0.795
EFB35677.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.785
EFB34369.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.780
EFB34371.1
SusD family protein.
  
 
   0.763
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.