STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDFeS assembly protein SufD; Psort location: Cytoplasmic, score: 8.96. (449 aa)    
Predicted Functional Partners:
sufC
KEGG: ava:Ava_0425 2.5e-80 sufC; FeS assembly ATPase SufC K09013.
 
 
 0.996
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.978
sufB
FeS assembly protein SufB.
 
   
0.830
EFB34195.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.720
EFB35582.1
Putative FeS assembly SUF system protein; KEGG: mba:Mbar_A2421 9.5e-12 serine O-acetyltransferase / hypothetical protein (multi-domain) K00640; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.651
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
     
 0.635
sufE
Fe-S metabolism associated domain protein; KEGG: cps:CPS_2211 5.6e-18 putative selenocysteine lyase K02426; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.580
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
       0.536
rimP
Hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
       0.511
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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