STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB33984.1Hypothetical protein; KEGG: baf:BAPKO_0675 4.5e-11 recD; exodeoxyribonuclease V, alpha chain K03581; Psort location: Cytoplasmic, score: 8.96. (688 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.831
EFB36548.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: eci:UTI89_C0501 4.4e-67 htpG; chaperone HSP90, heat shock protein C 62.5 K04079; Psort location: Cytoplasmic, score: 9.26.
  
 0.815
EFB33983.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB36224.1
KEGG: ava:Ava_2150 2.8e-16 response regulator receiver signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.97.
   
 0.761
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.754
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.726
EFB36492.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dvu:DVU2587 1.2e-13 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.46.
    
 0.704
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
   
 0.675
EFB36309.1
UvrD/REP helicase; KEGG: bfs:BF2555 4.4e-225 putative helicase K03657.
  
 0.674
EFB34637.1
Hypothetical protein; KEGG: ayw:AYWB_115 1.6e-08 uvrD; UvrD helicase K03657.
  
 0.674
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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