STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB33987.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
EFB33986.1
Hypothetical protein.
       0.773
EFB33990.1
Relaxase/mobilization nuclease domain protein.
 
     0.769
EFB35084.1
Hypothetical protein.
 
   
 0.734
EFB36473.1
Tetratricopeptide repeat protein.
 
   
 0.670
EFB33988.1
Hypothetical protein.
       0.658
EFB33989.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.658
EFB33991.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.658
EFB36009.1
ParB-like protein; KEGG: pub:SAR11_0354 1.7e-40 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 8.96; Belongs to the ParB family.
  
 
 0.639
EFB33992.1
Hypothetical protein.
       0.628
EFB34080.1
SusD family protein.
  
 
   0.584
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.