STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB33990.1Relaxase/mobilization nuclease domain protein. (370 aa)    
Predicted Functional Partners:
EFB33988.1
Hypothetical protein.
       0.773
EFB33989.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB33991.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB33987.1
Hypothetical protein.
 
     0.769
EFB33992.1
Hypothetical protein.
       0.737
EFB35084.1
Hypothetical protein.
 
  
 0.694
EFB33986.1
Hypothetical protein.
       0.658
EFB36615.1
UvrD/REP helicase; KEGG: hpa:HPAG1_1502 2.0e-31 ATP-dependent nuclease K01144; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.549
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.545
EFB34241.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.543
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.