STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB33781.1TonB-dependent receptor. (302 aa)    
Predicted Functional Partners:
EFB35302.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
  
   0.795
EFB33779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EFB33780.1
Sel1 repeat protein; KEGG: cch:Cag_1938 1.4e-45 Sel1-like repeat; Psort location: Extracellular, score: 9.71.
       0.773
EFB34094.1
Hypothetical protein; KEGG: oih:OB2331 0.0017 bacillopeptidase F.
  
   0.761
EFB33778.1
Hypothetical protein.
       0.752
EFB35403.1
OmpA family protein; Psort location: OuterMembrane, score: 9.92.
 
 
 
 0.746
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
   0.741
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
   0.740
EFB33897.1
Hypothetical protein.
  
   0.686
EFB34064.1
Hypothetical protein.
  
   0.657
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.