STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEG29058.1LPXTG-motif cell wall anchor domain protein; KEGG: ath:At5g49570 3.0e-08 K6M13.12; expressed protein. (1796 aa)    
Predicted Functional Partners:
EEG29056.1
F5/8 type C domain protein; KEGG: sus:Acid_4210 8.3e-65 alpha-L-fucosidase K01206.
  
     0.741
EEG29754.1
Hypothetical protein.
  
     0.699
EEG29059.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
 
    
0.688
EEG28820.1
Hypothetical protein.
   
   0.667
EEG29814.1
Hypothetical protein; KEGG: lsl:LSL_1486 2.6e-62 aes; endo-1,4-beta-xylanase K01181; Psort location: Cytoplasmic, score: 8.87.
  
     0.538
EEG29438.1
Hypothetical protein; KEGG: rba:RB700 3.0e-12 ramA; alfa-L-rhamnosidase.
  
     0.518
Your Current Organism:
Clostridium methylpentosum
NCBI taxonomy Id: 537013
Other names: Clostridium methylpentosum ATCC 43829, Clostridium methylpentosum DSM 5476, Clostridium methylpentosum R2, [. methylpentosum DSM 5476, [Clostridium] methylpentosum DSM 5476
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.