STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.932
ACT57040.1
Hypothetical protein; COG0593 ATPase involved in DNA replication initiation; Belongs to the DnaA family.
  
  
 0.758
ACT57553.1
COG3750 Uncharacterized protein conserved in bacteria; Belongs to the UPF0335 family.
  
     0.743
recF
Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
 
 
 0.702
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
  
 0.699
ACT57273.1
COG3820 Uncharacterized protein conserved in bacteria.
  
     0.661
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.634
ACT57428.1
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.634
ACT56656.1
Single-strand binding protein (ssb); Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
 
 0.620
ACT56897.1
COG1396 Predicted transcriptional regulators.
  
    0.612
Your Current Organism:
Liberibacter asiaticus
NCBI taxonomy Id: 537021
Other names: C. Liberibacter asiaticus str. psy62, Candidatus Liberibacter asiaticus psy62, Candidatus Liberibacter asiaticus str. psy62, Candidatus Liberibacter asiaticus strain psy62
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