STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCAN_0188Hypothetical protein containing a COG2404 predicted phosphohydrolase domain. (349 aa)    
Predicted Functional Partners:
flhA
Flagellar biosynthesis protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.805
HCAN_0435
Hypothetical protein containing a partial COG4105 ComL DNA uptake lipoprotein domain.
  
    0.773
holA
DNA polymerase III holoenzyme delta subunit [Helicobacter pylori HPAG1].
  
     0.770
HCAN_0339
Hypothetical protein containing a COG3400 uncharacterized conserved protein domain.
  
     0.767
HCAN_0797
Hypothetical protein containing a COG1040 ComFC predicted amidophosphoribosyltransferase domain.
  
     0.767
ftsX
Cell division protein FtsX [Helicobacter hepaticus ATCC 51449].
  
     0.767
atpF-2
ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.766
HCAN_1552
Purine nucleoside phosphorylase.
  
     0.764
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
     0.761
HCAN_1540
Hypothetical protein containing a DUF507 domain of unknown function.
  
     0.761
Your Current Organism:
Helicobacter canadensis
NCBI taxonomy Id: 537970
Other names: H. canadensis MIT 98-5491, Helicobacter canadensis ATCC 700968, Helicobacter canadensis H438, Helicobacter canadensis MIT 98-5491, Helicobacter canadensis NCTC 13241, Helicobacter canadensis NLEP-16143, Helicobacter canadensis str. MIT 98-5491, Helicobacter canadensis strain MIT 98-5491
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